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Optimizing de novo genome assembly from PCR-amplified metagenomes
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is … synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This … has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… led by UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… all else, determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the internship program, …
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Accelerating Metagenomics Discoveries with Deep Learning
… a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Meeting Code of Conduct
All participants and staff of the JGI events are required to adhere to the following Code of Conduct. Event organizers will enforce this Code …
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Zhong Wang
… on developing new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up … genomics analysis to peta-bases, and enabling data-driven science. This is a group of computational biologists, … GPU, Cloud etc) and their applications in solving DOE’s most challenging problems. … PhD Cell Biology. Duke …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer … select group of bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Digging into Microbial Ecosystems Deep Underground
… deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … work builds off a proposal approved through a collaborative science initiative called Facilities Integrating … due March 16, 2022 to freely access resources at multiple DOE user facilities through the FICUS research support …
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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VEGA Symposium
Hosted by the JGI and co-organized with NIST,  the goal of the Viral EcoGenomics & Applications (VEGA) symposium was to bring …
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