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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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How Filamentous Fungi Sense Food
… decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and … break down the wide array of simple and complex components present in plant biomass. This is of interest for … armed with a variety of PCWDEs to first break down the components of plant cell walls, which range from simple to …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… Clement Coclet and Simon Roux Tyrome Sweet and mentor Jonelle Basso Yumary Vasquez and mentor Juan C. Villada … lab. And I find this really valuable because in this time that I’ve been in my PhD program, I’ve been really … field, I lead a research team. I think, yeah, that’s maybe one possibility.  Sean Saki : Yeah, I think the, the main …
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Webinars on Offerings & Capabilities
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Four Researchers Join JGI User Executive Committee
… at Michigan State University. He studies fungal biodiversity, ecology, and evolution, with a focus on … with both domesticated and wild animal and plant hosts. One main focus of his service to the community is in the … held an adjunct appointment at the JGI, during which time he led the development and initiation of the Genomic …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… issue of Nature, the study highlights the vast functional diversity of microbes by looking at protein function within … ability to break down lignin , the hardiest of plant components and a key barrier when breaking down biomass. He was … on a study which identified new genomes highlighting the diversity of white rot fungi in the genus Lentinula. Dan …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted … Class using CRAGE Technology Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by … a plant growth promoting bacterium. And my mentor is Dr. Jonelle Basso. Shayna Bennett : So while here at the JGI, …
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First Monoploid Reference Sequence of Sugarcane
… Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple … its estimated size of 10 billion bases (more than three times the size of the human genome). As part of a proposal …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… Rumen microbes have the ability to break down hardy plant cell walls and therefore hold clues to how humans could do … the same on an industrial scale to produce biofuels . Since one of the challenges of developing alternative fuels from … based on their potential to efficiently degrade lignocellulose in cow rumen, essentially what makes them so …
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Gone with a trace: cataloguing the disappearing gut microbes
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