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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … of approaches to match a virus with a potential host. This can result in different predictions. The iPHoP program …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … that way,” said Kellogg, a senior author of the paper. “This paper is the first one to survey a huge amount of …
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Yeasts and how they came to be
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Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
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JGI User Executive Committee Expands
Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Along with the existing UEC members, their areas of study span the research interests of the JGI’s user …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have … of the Golden State have been succumbing to a pathogen. This ‘“alien’” organism — one previously unseen — is, in … rapid diagnoses for SOD. These techniques were also instrumental in tracing the genetic signature of the organism …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have … our collaborations and capabilities to enable great science that will help solve energy and environmental … from individual environmental cells. The proof of principle study built off earlier approaches and offered a way for …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … Part of efforts to develop pangenomes for these species, this approach would also allow researchers to learn more … call. Richard Dick of The Ohio State University aims to study plant drought resilience in the Sahel, an arid region …
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JGI & KBase at PAG XXVII
XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint … representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a project with … Genomics Building (IGB). Click here to learn more about this move. …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome … subsequently generated one of the first mouse models for this common neurological disorder. In 1999, he was named a … a vision for future technical JGI directions for DOE User science. … Complete Publications Genomic Technologies …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and … I-MA et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … “The JGI DNA Synthesis Science Program has been instrumental in establishing larger-scale research projects in … and her own as an early career researcher. “We were able to study hydrocarbon biosynthesis at a scale that would …
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