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The JGI Data Portal: Improving User Experience
… between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download … processes from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal … , and PhycoCosm , serve researchers with unique areas of focus and data and computational needs. Over its 23-year …
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JGI@25: Studying Sorghum’s Survival Skills
… sorghum’s survival secrets could change not only how we use and grow sorghum, but other important crops as well. In … of sorghum projects at the JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the … of sorghum begins. Enabled by the JGI’s Community Science Program, Todd Mockler and his team collect diverse lines of …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle …
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I-Min (Amy) Chen
… her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and … S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …
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JGI announces 2023 CSP Functional Genomics awardees
… functional genomics research from potential users who need help translating genomic information into …
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JGI announces 2024 Functional Genomics awardees
Tapping into these functions allows researchers to use them for engineering applications in support of … capture, enhancing atmospheric carbon sequestration into sustainable biomaterials, and developing high-throughput …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… will help solve energy and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the … microbes like bacteria, algae and protists, all kinds of viruses impact many ecological processes, including carbon cycles. “Whether or not you planned it, viruses are most likely in your system and in your data, and …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. He received his Ph.D. from the Wellcome Trust Sanger Institute and Cambridge University University in … in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs custom …
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Webinar: Introducing the BioSANS capability
… instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, EMSL’s … “Solar Energy Conversion in Cyanobacterial Membranes” Marcus Foston, Washington University in St. Louis on “Integrated … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Rex Malmstrom
… and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. …
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SIPs with Standards
Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This episode, Rex … SIP, more standardized -- more reproducible, more reusable, and more insightful, for the future of studying …
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