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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… archaea and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Computing Center (NERSC) , another DOE Office of Science User Facility located at Berkeley Lab. Principal …
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then … Scientific Computing Center , a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory. …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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The fungus that made itself at home
… of Oslo scientists and including researchers at the Joint Genome Institute, a DOE Office of Science User Facility, compared the genomes of two strains of fungi Serpula lacrymans – var. … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
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The widespread IS200/605 transposon family encodes diverse programmable RNA-guided endonucleases
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Learning to Look
… by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could … Scientific Computing Center , another DOE Office of Science user facility.   … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of how … Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … “While I never said this out loud,” Drell said, speaking to users and staff at the JGI’s 2022 User Meeting, "I think I had the easiest job in the office.” …
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
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