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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Mapping N-Linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry
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Evolutionary Analyses of Gene Expression Divergence in Panicum hallii: Exploring Constitutive and Plastic Responses Using Reciprocal Transplants
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Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach
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Benjamin Cole
… interpret different light cues by altering their growth program, and on how plants coordinate their gene expression …
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At the Forefront of Terrestrial Virus Research
… He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research opportunities …
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UC Merced Interns Reflect on Their JGI Summer Projects
… language processing techniques to categorize genetic information. Learn more about their work here in a series of … at the end of the summer. The JGI-UC Merced internship program was founded in 2014 with the goal of inspiring … foster a diverse future workforce in science. Since the program’s inception, more than 30 students have contributed …
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Doubling Down on Known Protein Families
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of these communities via whole genome sequencing of the samples, without being able to distinguish which gene … genes were typically discarded from any analysis as useless information. These represent the ‘unknown unknowns’ because …
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An Automated Tool for Assessing Virus Data Quality
… are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and guidelines for providing the minimum amount of information for an uncultivated virus genome. CheckV has …
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Dispatches From JGI Interns
… Every summer, the flagship JGI-UC Merced Internship Program invites undergraduate and graduate students to …
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First Monoploid Reference Sequence of Sugarcane
… breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical … focused on the gene rich part of the genome by harnessing information from a sequenced related species – sorghum. The … genome now underway as part of the JGI Community Science Program (CSP), a critical factor in developing sugarcane as …
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In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes
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