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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of … with previous studies in the same system. With the right functional characterization, those genes could become dials …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns … Igor Grigoriev and Bishoy Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying unknown compounds … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … fluctuating environmental conditions. The team aims to functionally link gene families to photosynthesis and discover gene functions that may be relevant to both algae and land …
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Training the Next Generation of Talent
DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back …
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Daniel Udwary
… group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior … (1996) … List available on Google Scholar … Education … Publications …
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Benjamin Cole
… (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package … Education … Selected Publications … Software …
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Zhong Wang
… and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … the Wang group has developed customized data analyses and software to enable “grand-scale” scientific projects. These … metagenome binning software … Education … Selected Publications … Software …
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Emiley Eloe-Fadrosh
Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … Fellow at the Gordon and Betty Moore Foundation as part of the Marine Microbiology Initiative. She conducted her … Futures … Metagenome Science Program … Education … Selected Publications … Awards and Service …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Trent Northen
… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development and application of advanced mass spectrometry approaches and model … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … Probing (SIP) Metagenomics pipeline  that reveals in situ functional activities of specific microbial groups within … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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