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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
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John Vogel
… on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, … distachyon pan-genome correlates with population structure. Nat. Comm. 8(1), 2184 doi: … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Genome-based analysis of virulence determinants of a Serratia marcescens strain from soft tissues following a snake bite
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Fishing for Novel Cellulose Degraders
… at Lawrence Berkeley National Laboratory (Berkeley Lab). Using a single-cell screen, they can now identify microbes … the team then used DNA synthesis and cloning, followed by protein in vitro expression and mass spectrometry-based … ‘Tackling microbial-mediated plant carbon decomposition using “function-driven” genomics’. …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… cells, and both organisms rearrange their cells around this structure to facilitate sharing.  Recently, researchers have … been able to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of … and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint … carbon and nutrient flux in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former …
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Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens
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Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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