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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… to tree health and carbon storage — skills that matter increasingly as the climate warms. However, these are complicated … similar functions across different forests. Primary metabolism, cell activity, and fungal development looked … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) … take place at the Seattle Marriott Waterfront in Seattle, Washington.   Topics will include:  environmental microbiomes … community access to cutting-edge capabilities for omics-based and analytical characterization, imaging, and …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI … for bioinformatics internship opportunities in fields ranging from plant-microbe interactions to functional … shared their experiences below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD …
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Nikos Kyrpides
… (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters … of microbial ecosystems, INRA, France; A Knowledge-Based Bioinformatics Framework for Microbial Pathway …
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held … he began developing larger comparative genomic systems as the JGI’s eukaryote research efforts expanded to include … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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2024 Progress Report
… (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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The Case for Conservation
How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The … a single set of chromosomes, are available. The genome assemblies highlight the multiple advances in sequencing …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses … T., & Bowen, B. (2013). OpenMSI: a high-performance web-based platform for mass spectrometry imaging. Analytical … Google Scholar. … Education … Awards and Honors … Selected Publications …
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MGM Workshop at Fisabio Summer School
Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and related fields who are interested in learning and sharing concepts, tools and … in this area, by means of theoretical lectures and seminars as well as practical hands-on sessions in bioinformatics and …
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