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… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these long-reads … of the library. 6mA and 4mC (~50x depth), 5mC (~250x depth required). Methylation detection currently only … related to clean energy generation and environmental characterization and cleanup. The JGI provides integrated …

… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … related to clean energy generation and environmental characterization and cleanup. The JGI provides integrated …

… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … this year. And today we have our conversation with Professor Alison Narayan, from the University of Michigan. I … has to do with the mechanism. And so these enzymes use O2, and one of those oxygen atoms gets incorporated into our …

… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … endobacteria, the Rhizopus fungus cannot act as a plant pathogen, it cannot reproduce asexually, and … JGI team sequenced and annotated a host genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes project. As …

… A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … could be generating these observed patterns. As many other plant species have natural cytotype variation, we also hoped …

… from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those …

… . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many … crop that very efficiently converts solar energy into plant biomass, which can then be crushed to extract the … as a reference. The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with …

… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a wealth of managerial experience from almost 20 years in the … focused on the discovery, development and commercialization of novel production organisms and fermentation processes for …

… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … than 500 species of fungi. The Impact Interactions between plants and fungi run the gamut from mutually beneficial to … of life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering …

… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in …

… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 … and their evolution could provide strategies for converting plant waste into sugars for  biofuel production. …