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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome … Merced Internship Program was brimming with excitement and determination as they came onsite. From data carpentry … Igor Grigoriev and Bishoy Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and …
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Simon Roux
… viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … Roux et al., 2023. iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Getting back to the grass roots: harnessing specialized metabolites for improved crop stress resilience
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IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites
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Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics
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Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens
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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication
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Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum
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Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites
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NeLLi — Symposium on New Lineages of Life
… “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward … shift from uncovering microbial novelties to deciphering metabolic and functional capabilities. Overview of Symposium … novel microbial lineages, leading to a new appreciation for the extent of diversity. The phylogenetic and functional …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… of JGI-supported research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao …
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Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone
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