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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion nucleotide bases of DNA … the Integrative Genomics Building—the new home of the JGI and KBase in the heart of the Lab’s 200-acre campus—with the …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to … of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … switchgrass for bioenergy production. Building on the framework provided by our new switchgrass manuscript , we …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… cell is key to interrogating what genes do, how they work, and applying them to environmental and energy challenges. … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo …
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Simon Roux
… link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in …
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
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New Tricks with Old Bones
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field studies related to her thesis on cone snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a … metabolites and associated genes are great resources for bioremediation, new agricultural applications or … plant tree of life. Ultimately, the resulting comparative framework can inform the efficient production of plant-based …
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MAGI: A Method for Metabolite Annotation and Gene Integration
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Siderophores and secondary metabolites produced by Ganoderma adspersum
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Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus
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