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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … and stark the biogeographic boundary is between them. The data is somewhat beautiful in that regard,” said Andy Allen, …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing …
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Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis
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Draft Genome Sequence of Frankia sp. Strain QA3, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Alnus nitida
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Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina
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Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment
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Genome Sequence of Roseovarius sp. Strain MCTG156(2b) Isolated from a Phytoplankton Net Trawl on the Scottish West Coast
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The Surprising Structure of a Shrub Willow Sex Chromosome
… is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in … first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst …
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Dan Rokhsar
Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the … and animals by combining computational genome analysis, sequence-based genetic methods, and comparative …
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Outreach Stories
Interested in reading more JGI intern and mentor success stories? Read more below. …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome … with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and …
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