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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …
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Making a Lichen Together
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and … is able to survive drying out to a potato-chip level of crispiness, only to revive in mere seconds or minutes — a … work was supported by an intramural seed grant (IGSP 2008001) to DA, FL, and FD from the Duke Institute of Genomic …
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Benjamin Cole
… … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of … of Cell Identity as an R package … Education … Selected Publications … Software …
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JGIota: A Surprise for Chloroflexota — The First Flagella!
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Ancient Algae Reveal Secrets of Plant Evolution
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … This work was funded by the US National Science Foundation (NSF) CAREER award (DBI-1652164, 1933521), the Nebraska Tobacco Settlement …
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Filling in the Plant Tree of Life
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Decoding Yellowstone’s Microbial Mats
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… for protecting these ecosystems. … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of Energy …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the … mat, the virus-to-host ratio for most pairs was close to 1. Even the most abundant virus was only 11 times more …
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Neha Varghese
… and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database …
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