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Exploring Phages at JGI
… As a first-generation college student, I never really entertained the possibility of working at a national laboratory. However, through the JGI-UC …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically … mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. … to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) …
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Gotta Catch 'Em Gall
… Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So … In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's …
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more virus sequences are being … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements … also carries out custom preparative work for difficult user projects, including those that require fluorescence … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from … genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and Innovation (cofinanced by FEDER …
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JGI Welcomes New UEC Members
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect …
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Styling for Safety: PPE, It’s the JGI Way
… PPE or Personal Protective Equipment is worn to minimize exposure to hazards that can cause workplace injuries and illnesses.  PPE or Personal Protective … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by the Oak Ridge Leadership Computing Facility … Oakridge National Laboratory Hackathon …
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A Powerful Technique to Study Microbes, Now Easier
… Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number … and their biosynthetic logics to be understood, accessing these untapped metabolic capabilities is often tedious and resource intensive. This is often due to, for example, tight …
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