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New Vision, New Mission, New Plan: The JGI’s Next Five Years
JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for … (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of Science user facility with … of DOE resources. This approach, combining a forward-looking vision with a detailed implementation path, has …
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Understanding Wildfire Recovery, Starting in Soil
… and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes within the soil. To get a clearer picture of how burned ecosystems return to … genes with functions useful for forest recovery, this study sheds light on how microbes contribute as a forest …
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JGI Portals
… scientific community and require constant developments to meet the ever-changing demands of our users. … Download … Data Portal to eventually replace the Genome Portal. … GOLD is a web resource for comprehensive access to information … descendants of ancestral genes are constructed at key phylogenetic nodes. These families allow easy access to …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are … head Emiley Eloe-Fadrosh outline more targeted approaches to reconstruct individual microbes in an environmental … approach uses fluorescence-activated cell sorting (FACS) to sort cells into several small pools before sequencing to …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete genomic results from … the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists … it’s difficult to link the connections to them from the genetic elements that scientists have found, e.g. plasmids …
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The … their tool before felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … “All along the way, it was just like rediscovering genetics, with the evolution of sequencing technologies and …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy … served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to rapidly growing the … in wild populations for the first time. A 2020 Nature Genetics paper describing the genomes of the five major …
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David Goodstein
… at Cornell, IBM, Utah State University, and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene models in … metazoans and plants. Working with a talented team of scientists and software engineers, Dr. Goodstein currently leads …
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Extracting the Secrets of Secondary Metabolites
… for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which … is a technique researchers can use to integrate large genetic payloads directly into diverse microbes. Combining … to identify which pathway corresponds to which metabolite. Finding a vehicle by which to introduce CRISPR into the …
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A Plant Root Atlas for Tracking Developmental Trajectories
… team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and Uwe Ohler … User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “This represents the largest … are hallmarks of different cell types.” His contribution to the paper also aligns with his DOE  Early Career Research …
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