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Three Join the JGI User Executive Committee
… is a staff scientist at PNNL and thrust lead on PNNL’s Soil Microbiome SFA. She serves as Secretary within the … in how microbes influence biogeochemical cycles in soils and sediments and plant-microbial interactions in crops. He has been a PI or Co-PI on five …
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iPHoP: A Matchmaker for Phages and their Hosts
… these microbes. A better understanding of virus-host interactions opens the possibility of using phages to … One day, these phages could boost plant-microbe interactions, nutrient cycling, or carbon sequestration. … microbiome data. In other environments, such as terrestrial soil, having additional isolates and metagenomic datasets …
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The Power of One, Amplified
… profiles. This is akin to the structure of social media networks where one social media group may have a relatively … of friends, while another might exhibit few limitations to interactions and new connections, thus sharing more ideas, …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and mentor Robert Bowers, … Tools and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m … manipulating huge amounts of data. I was excited to work on fungal genomics and the fact that I got to do a project …
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Gut Fungi: Unexpected Source of Novel Chemicals
… . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this … , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of … only by aerobic fungi. In order to identify more of the fungal natural products, O’Malley and her team plan to use …
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Alabama A&M Interns Access An Abundance of Knowledge
… Alabama A&M University this fall for my master’s in plant soil science and my career focus is plant breeding. Ti’Yanna … is the area surrounding the roots of a plant in the soil. And I’m specifically working with a grass plant that’s …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Communications paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA … can develop high-throughput and high-resolution studies of interactions between host cells and viruses in the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … mean that the flagellum was retained in some terrestrial fungal lineages for an extended period of time, which would … triggered rapid diversification of the early terrestrial fungal lineages. Our analyses estimate these diversification …
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JGI@25: Solving the Mystery of the Missing Oil
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… peatlands store approximately one-third of the world’s soil carbon. The process to harvest energy-generating peat … species, some sphagnum may prefer the dryer, more elevated soil of the hummocks or the more water-logged hollows below. …
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10 From JGI on the 2019 Highly Cited Researchers List
… to: Project Manager Kerrie Barry, Cross-Field Category Fungal and Algal Program head Igor Grigoriev , Plant & … that presented the first large analysis of an Aspergillus fungal subgroup, section Nigri. Aspergillus fungi play …
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Busting the Unbreakable Lignin
… wasn’t quite accurate, and maybe anaerobic fungi living in soils or the guts of livestock were more capable than … conducted RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic …
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