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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The … component of peatlands, processes  carbon can help maximize peatlands’ potential as carbon sinks and minimize their … bogs have two distinct zones: Hummocks and hollows flow like hills and valleys, on a smaller scale. Depending on the …
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Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel Visel teamed … illness, disease risk, and treatment response due to fungal genomics internship with Igor Grigoriev. Portia Mira …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … (RIViT-seq) to facilitate the characterization of transcriptional regulation as well as … transcription of gene sets associated with functions like stress responses and cellular differentiation. The …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of viruses … a broad range of environmental challenges, characterizing viruses is a key step. For decades, though, many …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of … also, so that the reusable stuff that’s very expensive, like lab equipment and ergonomic equipment – all of that is … with Sustainable Berkeley Lab, which is also piloting a zero waste effort at the IGB. “Sustainable Berkeley Lab is …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … to directly measure environmental or biological samples (like cell media or lake water) without doing a metabolite … for funding by JGI? A: The JGI is not a funding organization. Rather, it makes its sequencing, synthesis, …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant genetics/genomics? … allowed us to pinpoint and rank biologically relevant and evolutionarily conserved genes that could be potential …
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David Goodstein
… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … eukaryote research efforts expanded to include basal metazoans and plants. Working with a talented team of scientists … 72, 411. Gordon et al., 2020.  Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as a … if you have to go out and collect wood to cook, not just like walking into your kitchen,” McClean said. “…The less …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … JGI is one of the only places that could take on a project like this because we have the resources as a user facility. … seminars with the class. The 18 students organized and conducted a field trip, armed with the proper …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … science. I mean, I’m really, it’s not hyperbole, I think like it’s, it’s this unique time where the preceding 300 … to clean energy generation and environmental characterization and cleanup. The JGI provides integrated …
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