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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is … the JGI has deployed CRAGE to successfully domesticate some 60 strains, inserting into them a genetic sequence that acts … — a proof-of-principle for investigating plant-microbe interactions. A final recent advance in CRAGE is the …
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Game On: High School Students Drive Everglades Metagenomics Study
… used to map their routes had been taken. Sifting through 16 Trillion Bases of DNA Taking into consideration some … The class had to sift through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study … partnership with Boca Raton Community High School. On June 26, 2019, the students gave a team presentation on how they …
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Institutional User Agreements
… binding contract.   All User researchers must have their home/employing institution sign a JGI Non-Proprietary User … Appendix are available for download.)  After your home institution has signed, all documents can be emailed to … completion of work on all approved proposals within 36 months from the approved start date. Additional time …
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Petra Byl
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Forming Scientific Connections and Building Community
… distachyon root transporters in plant-microbiome interactions ” Cory-James Pugne-Andenoro : “The best part of … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan …
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Emiley Eloe-Fadrosh
… quantitative analysis strategy for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, … microbiomes. Biotechnol . doi: 10.1038/s41587-020-0718-6. Wood-Charlson EM, et al. 2020. The National Microbiome … archaea across Earth’s biomes. Nature Microbiol. 4: 1895-1906. Roux S, et al. 2019. Minimum information about an …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
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Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
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Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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A Collaboration to Improve Plant Genome Annotations Across Species
… a better handle on the gene function helps identify the molecular targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, … overreliance on a few species like Arabidopsis or rice as homology models for computational function predictions and …
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