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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … of significant interest for their potential contributions to a sustainable bioeconomy, including, potentially, methane … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
JGI and the Workforce Development & Education department of Lawrence Berkeley National Laboratory (Berkeley Lab) hosted a pitch event promoting … institution, one of which may be a graduate student. Applications are solicited annually for the summer term (May …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a … that showcase our collaborations and capabilities to enable great science that will help solve energy and … including Chromochloris zofingiensis , which has applications in both biofuel and pharmaceuticals. The team …
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Diversity of genomic adaptations to the post‐fire environment in Pezizales fungi points to crosstalk between charcoal tolerance and sexual development
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in … With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the …
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Extracting the Secrets of Secondary Metabolites
… survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … yield new tools for pest control. Secondary metabolites are highly regulated in bacteria, making it difficult to … and their pathways could fuel further agricultural applications for pest control and understanding how the …
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JGI User Executive Committee Expands
Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus … fungi are part of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … to plant biomass. One of these techniques was DAP-seq, a high-throughput method for identifying protein binding sites …
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PhycoCosm Tutorial
… more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy …
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JGI@25: Stories from Intern Alumni
… . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. Over the past 25 years, the JGI has hosted …
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … engineering could lead to sustainable pathways for making high-value bioproducts including biofuels. In addition, the … synthesized by JGI was versatile enough for use in multiple applications. This proof-of-concept experiment offers a new …
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