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Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for … samples in support of user science.  Capabilities offered by the platform are a result of Dr. Louie’s establishment of …
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Better Living Through Bioenergy
… research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … joint user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … Kumaran D, Xie M, Fahey A, Santiago K, Hu F, Regulski M, Blaby IK, Ware D, Blaby-Haas CE. (2024) Functional …
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JGI-UC Merced Interns Share Their 2021 Experiences
… in professional development enrichment activities. For some students in the 2021 cohort, this was their first … Line Between Plasmids and Phages … Polymorphisms Created by Transposable Elements … Evolution of the Mitochondria … … Cataloging Lineage Specific Conserved Genes in Giant Viruses … Pan-genome Graphs: Approaches for Complete …
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Understanding Wildfire Recovery, Starting in Soil
… forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the … at microbial genomes across a spectrum of burned soils. By connecting microbial genes with functions useful for … and Coniochaeata lignaria on MycoCosm Data portal … Datasets …
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JGIota: Looking Back at Methane-Making Microbes
We count on livestock for food and fiber, but raising these animals also produces … and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those microbial … milk, and wool. Hear more from JGI collaborators Sinead Leahy (New Zealand Agricultural Greenhouse Gas Research …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school … provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  … . “After discussing the project with him, I was inspired by his enthusiasm and drive to give his students this …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory … a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular … more  here about the “Facilities Integrating Collaborations for User Science” (FICUS) program. Letters of Intent are due …
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Virus-Microbe Interactions of Mud Island Mangroves
I wanted to incorporate that CSP, but also look at how viruses might be influencing the methane cycling within … coast of south Texas. At the JGI, Rambo’s work was overseen by Susannah Tringe, head of the Microbial Systems group. He … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his …
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Fungus Fuels Tree Growth
… always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of … particular interest to the U.S. Department of Energy (DOE). By better understanding how poplar responds to its intimate … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …
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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … -- more reproducible, more reusable, and more insightful, for the future of studying microbial communities.   …
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