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… at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism … IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M … project . They also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. …

… successfully simulated how successive waves of microbial populations degraded the dispersed oil.   Terry Hazen on …

… a quest to better understand the factors and mechanics of gene expression in over 400 fungi species. “Fungi are the … “survival of the fittest” theory — the most expressed genes found across each of the fungal species were … a virtual four-day data carpentry workshop for the incoming 2021 JGI-UC Merced interns to help familiarize incoming …

… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse … Phytozome v12, and that most bookmarked v12 links (e.g., to gene reports and organism information pages) will be …

… Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global metagenomics. Nature . … Camargo AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat Biotechnol . Epub. Neri … bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the …

… Interns Andrew Lin and mentor Vy Duong, Understanding Key Genes in Photosynthesis Ravikiran Madichetty and mentors TBK … Pathogens Shayna Bennett and mentor Robert Bowers, Mobile Genetic Elements and CRISPR Spacers in the Conifer Needle … : So while here at the JGI, I’ve been studying mobile genetic elements and CRISPR spacers in the conifer needle …