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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  … the family tree for Lentinula. Within those samples, this study also tracks the enzymes these fungi use to break down …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley … workshops. Of common interest is the method development to study active sites or single cells in their functional … latest advancements in imaging-related technology and instrument-analytical methods.  “The microfluidic devices we …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at … four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is complicated because, … These days, Session is starting his lab at Binghamton “studying polyploids and transposon evolution, expanding on …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective …
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of … require fluorescence activated cell sorting and non-standard molecular protocols.  Finally, his team utilizes new …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually … … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on …
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … encodes for an enzyme called RNS-directed RNA Polymerase (RdRP), necessary for replicating the RNA genome replication, … one of the project co-leads and first author of the study. Members of the Tel Aviv and NCBI teams, who were …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … a limiting factor – before or after flowering. For the study, the team grew two sorghum varieties: one that … or 44% of expressed genes respond to drought stress regardless of whether drought was applied before or after the …
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User Executive Committee Charter
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect … include: Make recommendations to the JGI regarding calls for proposals, including focus areas, …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples from four sites: … of saprotrophs, mycorrhizal symbionts, and pathogens, regardless of whether a sample came from the soil below a pine …
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