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… a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research … capable of running smaller assemblies — so we head there for a sense of what this supercomputing looks like. …

… to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and …

… soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … studies to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to … and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two …

… organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary across the global ocean. … and stark the biogeographic boundary is between them. The data is somewhat beautiful in that regard,” said Andy Allen, …

Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) … infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the …

… often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters … that address these issues. Check the scientific program for relevant posters. …

… hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm … State University (short talk): “Predators of the Deep: virus-host dynamics in the terrestrial subsurface” 2pm …

… 2019 in Nature Communications , two research teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria and …

… them to adapt to life on land. Learning that these genetic tools existed in close algal relatives  to terrestrial … of how plants adapted to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. … (grant agreement no. 101001675). … Zygnema on PhycoCosm … Dataset …

Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can … more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This … -- more reproducible, more reusable, and more insightful, for the future of studying microbial communities.   …

… is an image of Mono Lake, a saline soda lake east of California’s Yosemite National Park, taken by JGI’s own Jon … by the JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and …

… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the … that were missed using traditional approaches. This novel form of intermediate expression, when used in addition to … Metabolic engineering could lead to sustainable pathways for making high-value bioproducts including biofuels. In …