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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on … water samples when The Blob started. The samples were taken up and down the water column along the Line P transect, a … . The proposal focuses on uncovering the metabolic networks involved in carbon and nutrient flux in marine …
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Eelgrass Proves to Be Much Younger Than We Thought
… The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around … one of the largest carbon sinks in the ocean — occupying just 0.2% of the ocean floor, these meadows are … clock.  Various researchers around the globe were each working on their own genetic clock to discover when eelgrass …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny word. The … ActinoBase is tailored to help users overcome challenges working with actinobacteria and serves as a freely … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This … In just two months, the students participated in networking workshops, data carpentry hackathons, and also made … “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling : “Being a JGI intern means going …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Yeast … and  biofuels . This first report of their work, supported through the Emerging Technologies Opportunity … senior authors. “But this has been done most commonly in bacterial-based systems, and so one of the things that I …
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers have now developed … tool called CheckV that can automatically do both. The work was led by research scientist Stephen Nayfach, the …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … problem: at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … could be used for renewable fuel. In fact, lipids can make up more than 90 percent of the microbe’s dry weight. In …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: … Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those microbial …
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Four Researchers Join JGI User Executive Committee
… body, providing input on JGI policies and practices that support its user community. The breadth of scientific … an associate professor at the University of Georgia whose work is at the interface between biology and computer … development and initiation of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) project. As a UEC member, he …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … Kb. Additionally, the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, “we … 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work also used resources of the National Energy Research …
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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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