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Plant Microbial Interactions Group
… ecosystem. We are interested in how plants self-organize, influence, and are influenced by microbial partners. We … Plant microbiomes hold the amazing ability to influence plant development, fitness and … Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host metabolism, gene …
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Natural Prodcast Episode 17: Cassandra Quave
… sure we’ll hear more about that today. But it’s kind of amazing, just all of the things that Cassandra has done. And so … culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …
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Natural Prodcast Episode 3: The Primer, Part 3
… able to explore DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the … proteins that produce secondary metabolites. Do you recognize this? DNA 🡺 RNA 🡺 Protein ALISON: This is central dogma. … Something that’s you know …  ALISON: Central! DAN: That’s why they called it that! But for, maybe, people who are less …
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DNA Synthesis Program
… cutting-edge research in synthetic biology by synthesizing genes, pathways, and whole chromosomes for bioenergy … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … Design-Build-Test-Learn cycle, helping researchers optimize genetic systems. By enabling these cutting-edge …
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Microbiome Data Science Team
… technology advances in management, processing and visualization of “big data,” and artificial Intelligent/machine … new opportunities for breakthrough discoveries and catalyzing a major transition of biology into data science.  … enable large-scale comparative analysis, mining and visualization of big data. …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Synthetic Biology Lab
… We focus our efforts on integrating database mining and sequence design with scaling the production of large, difficult to synthesize constructs such as those involving biosynthetic clusters, … developing methods for converting digital information from sequence databases into biotechnological or environmental …
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Frequently Asked Questions: Project Management
… details, including a downloadable pdf of products categorized by Science Program.  … The “User” signing the JGI User Agreement will be an authorized representative from your institution (usually a legal … .  Note: the JGI does not recommend shipping a dry/lyophilized pellet. It is usually very difficult to resuspend the …
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Zymomonas diversity and potential for biofuel production
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Institutional User Agreements
… the legal authority to commit your institution or organization to the terms and conditions in the User Agreement. …  A version of the Bilateral DOE Laboratory Utilization Agreement specifically for the JGI’s DNA Synthesis … The MTA requires signatures by an institution’s authorized representative, the submitting researcher, and by LBNL. …
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Partnerships: Myco-Ed
… of new fungal species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes … to reduce teaching-lab costs, we have partnered with the Arizona Genomics Institute where high molecular weight DNA is … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a …
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Metagenome Program
… and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program … time-series metagenomic data with detailed characterization of model systems to explore the dynamics of microbial … and activity in natural environments. Integrating metatranscriptomes and metagenomes can, for instance, deepens …
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