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Fungal & Algal Program
Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … program also explores microeukaryotic members of microbial communities, cataloging gene markers, and producing … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial … Before work can begin on proposals submitted by researchers from another DOE National Laboratory, a JGI-BDLUA ,  BDLUA …
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Metabolomics Program
… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — … to analyze metabolites in environmental organisms, communities, and samples including state-of-the-art …
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Microbiome Data Science Team
Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … platform enables users to validate hypotheses generated from mining genomic data by designing and assembling …
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Transposon Mutagenesis Paired with Deep Sequencing of Caulobacter crescentus under Uranium Stress Reveals Genes Essential for Detoxification and Stress Tolerance
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal … are open to both domestic and international applicants from any institution type and at any career stage. … for advice!      … The deliverables can range from raw sequence data to well-annotated assembled genomes to …
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that … tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to JGI … strain for the production of biofuels and bioproducts from low-cost gas feedstock. For more information about the …
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Plant Program
… development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … focusing on how environmental stress and microbial communities affect plant growth and productivity. These … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …
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Special Initiatives & Programs
… capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA … with grants funded by DOE-BER requiring support from the JGI may  submit proposals here . Investigators … breakthroughs in basic science, and is exploring microbial-based synthesis of fuels beyond ethanol. … The JGI …
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