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Partnerships: Adopt-A-Genome
… in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or … necessary to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative …
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Frequently Asked Questions: Proposal Submission
… The deliverables can range from raw sequence data to well-annotated assembled genomes to … synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal. …
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Fungal & Algal Program
… bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, … and environmental solutions, fostering a bioeconomy powered by nature’s resources. … of algal biology using genomics and multi-omics by working with research labs and culture collections to …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … into how the multiple chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the …
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Secondary Metabolites Program
… underexplored reservoir of secondary metabolites produced by bacteria, fungi, algae and plants. These compounds are … program works to uncover these hidden biochemical resources by exploring the genetic pathways responsible for their … and function of these biologically significant compounds. By expanding the repertoire of secondary metabolites and …
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First Monoploid Reference Sequence of Sugarcane
… and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … sets of chromosomes to produce a monoploid reference sequence. For the highly polyploid sugarcane, an … approach that focused on the gene rich part of the genome by harnessing information from a sequenced related species – …
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Environmental Genomics Group
… Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of … our understanding of microbial ecology and metabolism by elucidating the functional potential of hard-to-culture … in various environments and their potential applications. By recovering population genomes from metagenomes, we gain …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv University in Israel, the … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Natural Prodcast Episode 17: Cassandra Quave
… in stores and online, and there’s an audio version, read by Cassandra, and the paperback version will be available in … culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …
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JGIota: Looking Back at Sequencing for Soybeans
… So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s …
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? … of them. A: Watch the video (above) for the answer provided by Sara 4.  Q(uestion): Are all CSP produced data …
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Project Management Office
… that all work performed in its User Facilities be covered by the User Agreement. …
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