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How to Submit Sequencing Samples
… please contact your Project Manager or jgi-project_managem[email protected] . … 1) Review JGI sample QC requirements and … QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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Nikos Kyrpides
… of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics … on Microbiome Data Science. His group is developing novel methods for enabling large-scale comparative analysis, … et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. …
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IMG Webinar Series
… of webinars related to our Integrated Microbial Genomics & Microbiomes portal. …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial … through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully … data from the JGI’s  Genomes from Earth’s Microbiome , or GEM catalog). Then they removed any genes with even a remote …
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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re … (Try it yourself  here .) She translated her abstract from a 2019 conference. Both versions appear side-by-side …
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User Support
The JGI Project Management Office carries out a number of activities to … execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission … specific milestones, either by automated emails or emails from your Project Manager. Your Project Manager will also …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … changing planet. In this short audio production, we’ll hear from Ed Hall, an ecologist at Colorado State University in … more than 100 years. And in particular, there’s an inflow from the mining activities upstream and downstream of the …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… prefers to be known among friends in natural products. He’s from Langebio in Irapuato, Mexico, and an incredibly bright … it is more related to what JGI does, which is sequence genomes. And we just published last year in the Nature … in this case EvoMining, we might be able to find any new genomes, new areas or regions or loci, that encode for new, …
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A genomic catalog of Earth’s microbiomes
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that … plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … Sciences (CEPLAS), both funded by the Deutsche Forschungsgemeinschaft. F.M. salary was covered by the DECRyPT 2125 …
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Synthesis
… : a team that develops data science tools for workflow management and novel automations for DNA design, assembly and analysis … platform enables users to validate hypotheses generated from mining genomic data by designing and assembling …
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Uncovering the Core Microbiome and Distribution of Palmerolide in Synoicum adareanum Across the Anvers Island Archipelago, Antarctica
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