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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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Enzyme engineering and in vivo testing of a formate reduction pathway
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Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
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Mission
… by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … of genome biology and develop the genome-scale engineering technologies needed to design, build, and … are at the core of many environmental processes, and the genetic makeup of microbial species and communities forms …
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Metagenome Program
… along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … that support user analysis of biogeochemically-relevant pathways, enabling modeling of microbiomes based on … ) to enable the research community to perform large-scale multi-omics analyses on new and existing microbiome data.   …
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Pathway and Gene Discovery from Natural Hosts and Organisms
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Pathway discovery and engineering for cleavage of a β-1 lignin-derived biaryl compound
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Natural Prodcast Episode 15: Katherine Duncan
Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … where once you have a few of the pieces in a biosynthetic pathway, you can sort of interpret other things about the …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom … understanding of this symbiosis could offer improvements in multiple directions. On the fungi side, underground … this symbiosis. “Those are great candidates for genetic engineering. Our hope is that the community at large will …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom … understanding of this symbiosis could offer improvements in multiple directions. On the fungi side, underground … this symbiosis. “Those are great candidates for genetic engineering. Our hope is that the community at large will …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell … Nature Communications. 9 (1), 1-9 Schulz et al. (2017) Towards a balanced view of the bacterial tree of life. …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … during their evolution, the genomes of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a …
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