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Plant Program
… improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … Plant Flagship Genomes are selected through discussion with the JGI Plant Genome Advisory Committee and DOE, designating a set of JGI … accessions) and protocols (transformation, crossing, mutagenesis) are available to the community.   …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … there a tool in this platform to search fungal genomes in metagenomes? A: Search in metagenomes is available from … A: Absolutely! 12.  Q: Is it possible to use the Browse page tool to compare your own data with the JGI database? A: …
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Natural Prodcast Episode 16: Marcy Balunas
… almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … That is one of the really big frontiers for the next stage of natural product drug discovery I think. Or even … to hear more science from her, check out her podcast Genome Insider. She talks to lots of great scientists outside of …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley … Fellow where he identified a novel apolipoprotein (ApoA5) involved in human and mouse triglyceride metabolism. He …
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Entities inside one another ‐ a matryoshka doll in biology?
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JGI Workshops at PAG
… breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to …
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Webinar: PhycoCosm Tutorial
… data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … working with us please contact me at [email protected] 5.  Q: If we have RNAseq or proteome data that is based on a … not covered in these tutorials 6.  Q: On the genome synteny page, would it be possible to add a feature to look for …
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for … over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider on  Apple … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Improving the Cacao Genome and Phytozome
… will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … released by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  …
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JGI Advisory Committees Code of Conduct
… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National …
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