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… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … wanted to be true to my roots, and always work with marine systems because that’s just where my innate curiosity and … Pacific Ocean, or in the bay, and be able to do chemical analysis, as well as transcript analysis. And what we’re …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … with the standard CSP projects. In addition, they must utilize a broad range of the capabilities across at least two of … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s …

… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … IMG/M system serves as a community resource for comparative analysis and annotation of all publicly available genomes … Genomes Online Database … Integrated Microbial Genomes and Microbiomes … Integrated Microbial Genomes — Plasmid …

… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … to offer you. So there’s a lot of– we also have a lot of analysis pipelines, be it for, again, metagenome, … focus within BER anymore. We really focus on terrestrial ecosystems, but we work in coastal environments, brackish …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Dariia et al. (2023)  A standardized quantitative analysis strategy for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et …

… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … accepted proposals, sequencing, synthesis, metabolomics and analysis will be performed by the JGI at no cost to the … with the PI and proposing team. The work plan is formalized in a Statement of Work document. At the completion of a …

… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … progress developing new experimental capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] … 8734 2005 28 33.63 8400 8760 * Reflects actual data due to analysis beyond fiscal year-end close. …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …

… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, … Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise …

… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … a  few years ago, researchers can request quantitative SIP analysis as a capability in proposal calls to the U.S. …