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Plant Program
… challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and … to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … species and plant-microbe interactions, advancing efforts to create renewable energy sources and bolster …
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The Genomic Standards Consortium
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users … and curated data to support AI applications. In an effort to lead AI-driven genomic innovation to advance … accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and …
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Improving the Cacao Genome and Phytozome
… infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … annotated genome has been updated to a high quality modern standard and includes RNA-seq data. The improved  T. cacao …
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The genomic standards consortium: bringing standards to life for microbial ecology
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can … ways they're working to make this technique, SIP, more standardized -- more reproducible, more reusable, and more insightful, for the future of studying microbial communities.   …
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A second special issue of Standards In Genomic Sciences from the Genomic Standards Consortium
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … BGCs but highly fragmented, in most of the metagenome sequences that we’ve already analyzed. But that’s a whole …
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Genomic Standards Consortium Projects
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Natural Prodcast Episode 18: A CSP Primer
… It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for the … Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … species”… he’s now found that some fungi have different ITS sequences in their genome, which might get you a little …
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