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Artificial Polyploidy Improves Bacterial Single Cell Genome Recovery
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Decontamination of MDA Reagents for Single Cell Whole Genome Amplification
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Natural Prodcast Episode 11: Marnix Medema
… of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And … sometimes correlated or anti correlated, also with other cellular functions in the same and as it was other bacteria … in the GNPS framework in San Diego belong to the same samples as genomes that are in GenBank and which gene …
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scMicrobe PTA: near complete genomes from single bacterial cells
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Natural Prodcast Episode 5: Brad Moore
… the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of … of, better understand fundamentally what’s going on in the cell as it responds to its ocean environment. And as we … can dart inside a big bloom, and they can collect water samples. And when they collect water samples they can filter …
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Synthetic Biology Informatics Group
Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well …
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MeCorS: Metagenome-enabled error correction of single cell sequencing reads
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Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four … In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced … metatranscriptomes), as well as the genomes of single cells of the uncultivated SAR324. The constellation …
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Natural Prodcast Episode 9: Roger Linington
… advancement in sort of both areas. And I suspect that no single change will resolve the problem. But that stepwise … both on the NMR side and the mass spec side. So the single biggest advancement in NMR was the development of … carefully at these as being candidates siderophores. Or for cell-cell signaling or for, you know, other other roles …
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Partnerships: Myco-Ed
… through the links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page … and diversifies workforce training in fungal biology and genomics. Myco-Ed aims to integrate real scientific … Institute where high molecular weight DNA is extracted from samples, which is then sent to the JGI for genome …
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Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria
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