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A catalog of the diversity and ubiquity of bacterial microcompartments
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready for the public to tear it up. I’m super excited about this … all of those have ended up in the SMC database. There’s a web front end for it, and it’s just a massive pile of data. …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … We're trying to. JACKIE: So I was reading on your website that-- speaking of hormones, that you're also using … of organisms, so things like the NRL database - or online catalog, I guess. So we've also been able to get soils from …
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Plant Program
… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … species and plant-microbe interactions, advancing efforts to create renewable energy sources and bolster … and ecological roles to foster sustainable solutions for energy, agriculture and the environment. At its core, …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality genome and now crop researchers can work … world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 has been  …
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Publication Policy
… research project are appropriately recognized and credited for their work, while also adhering to the authorship … and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts to do so, and JGI expects …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for all … of the JGI User Agreement , JGI User Agreement for Federal Agencies , DNA Synthesis Appendix  and DNA …
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Natural Prodcast Episode 5: Brad Moore
… and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … Oceanography. And Brad and I, Alison, have known each other for quite a while because Brad was my postdoctoral advisor.  … Not a big leap, but then we began looking at microbiomes associated with various invertebrate organisms, …
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Gone with a trace: cataloguing the disappearing gut microbes
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Fungal Friends or Foes in Plant Roots
… health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … Fungal Genomes project can enable studies of plant root microbiome and other microbiomes by providing reference genomes of the key community participants and …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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