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JGI Portals
Our data platforms are a key resource for the broader scientific … constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. … organisms in ultra minimal media. So you could take International Streptomyces Protocol media number 2, ISP2, and …
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Sequencing Submission Requirements for DNA Synthesis
… please include the following items: … Sequence files for all constructs should be emailed to  Miranda … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group … Biology Program .  Representative software includes: gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool … for assembly by Gibson, Yeast recombination and Golden Gate methods SynTrack and associated tools, which track samples …
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Metabolomics
… functional genome annotation, improves understanding of the role small molecules play in diverse biological … of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse … liquid chromatography mass spectrometry (LC-MS) based methods in combination with advanced computational analysis. …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … about Antarctica, and we want to talk about molecular networking, because I really enjoyed the review that you wrote … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Natural Prodcast Episode 16: Marcy Balunas
… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … intriguing. The squid – the Hawaiian bobtail squid has two organs that solely house– whose sole function is to … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …
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DNA Synthesis Science User Advisory Committee
… on the effective management and strategic objectives of the programs. The Committee serves as the Program's key external advisory panels and advocates of Program strategy, … scientific relevance and quality. The Committee does not perform management functions nor do they direct the Programs’ …
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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … data gave the team unprecedented resolution to study the network of genes that contribute to the metabolisms that … have used the sequence of a “marker gene,” namely the 16S ribosomal RNA (rRNA) gene, to mark or identify microbial …
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CSP Large Scale Call
… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … and analytical capabilities. All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data …
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