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How to Submit Sequencing Samples
… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora
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Salt supplementation-induced metabolic reprogramming in Streptomyces coelicolor
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … An assay used for profiling transcription factor binding sites across entire genomes. This technology has been …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … set of over 300 genomes spanning the fungal kingdom's full taxonomic breadth. Across this set, the same 15 core genes — … as a resource for AI-driven approaches to predicting fungal metabolic traits from genomic data to understand how …
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Natural Prodcast Episode 18: A CSP Primer
… UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … (LAUGHS) Yeah. We do expect that or hope that a publication comes out of the work that’s done at the JGI. …
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Identification of ancient remains through genomic sequencing
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Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus
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Plant Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are … Plant microbiomes hold the amazing ability to influence plant development, fitness and …
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Ancient hybridizations among the ancestral genomes of bread wheat
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Comparative genomics of the genus Desulfitobacterium
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