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Untargeted, tandem mass spectrometry metaproteome of Columbia River sediments.
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses … viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in the … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to uncover the complex …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on …
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Natural Prodcast Episode 15: Katherine Duncan
… Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … the field in two ways. One, it uses the information of tandem mass spectrometry. So you’re taking each ion, each … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric …
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, sample/capacity limits, … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New …
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Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication
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Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation
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Development of Ratiometric Bioluminescent Sensors for in Vivo Detection of Bacterial Signaling
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Phylometagenomics of cycad coralloid roots reveals shared symbiotic signals.
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