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Genomics and Development of Lentinus tigrinus: A White-Rot Wood-Decaying Mushroom with Dimorphic Fruiting Bodies
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, metagenomic, or plant …
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Natural Prodcast Episode 17: Cassandra Quave
… things, because a lot of what we do at JGI in terms of the sequencing that we do is very people-disconnected, and … drug from the microbes in that soil, there are now international regulations that provide a structure for ensuring … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Natural Prodcast Episode 11: Marnix Medema
… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … a pipet again except for, of course, some cases when journalists come when they want to see you handle a pipet for … coding genes that are signatures for the presence of a specific type of biosynthetic gene cluster. And antiSMASH …
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Natural Prodcast Episode 14: Nigel Mouncey
… in science.  DAN: Excellent, Yeah. OK, cool. So then what specifically about natural products? What got you in that … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five years, working through two journal contracts for the Journal of Industrial Microbiology …
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Natural Prodcast Episode 7: Ben Shen
… started collaborating with Ben and his group to work on sequencing, synthesis and genome mining technology to help … I’m very happy to talk to you. And so this is the third international meeting on natural products, but as a new, I call … chance to deliver this molecule – very toxic molecule – to specific disease cells. So, the very first compound was …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring … by generating data in three overarching categories: DNA Sequencing , Biodesign and Metabolomics .  Many users rely … and platforms dedicated to synthesis, single-cell analyses and metabolomics. At the same time, the team is …
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User Support Analysis Group
… group provides computational analysis for new technology development and JGI user science projects. We perform … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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Natural Prodcast Episode 6: Marc Chevrette
… at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … MARC: That is a perfect way to put it. ALISON: She’s an international ambassador? MARC: Yeah, I believe it was 2012 when … actually been due to antibiotic use in agriculture. Well, specifically raising animals and, so, like a prophylactic …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, … of Oceanography. He got me into genomics of microbes, specifically of some that lived in the ocean and made some …
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RNA-Seq-based high-resolution linkage map reveals the genetic architecture of fruiting body development in shiitake mushroom, Lentinula edodes
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as … relevant bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center … Following DOE approval, project managers negotiate project specifics with PIs (including JGI scientists as needed), and …
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