Results

Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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Frequently Asked Questions: Project Management
Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … … work done by the JGI. More information is available in our Publications Policy on our Data Policy & Support page.  … …
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** … 99.8% Q3 2025 175     2,140     Q4 2025 175     2,167     *Includes Illumina and PacBio sequencing platforms. …
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Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
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Tanja Woyke
… nitrogen loss. Nature 536, 179-183. Ivanova et al. 2014. Stop codon reassignments in the wild. Science 344, 909-913. Rinke … User Programs … Education … Awards and Service … Selected Publications …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root atlas reveals developmental trajectories in wild type and cell identity mutants . Dev Cell. 2022 Feb 28. …
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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Axel Visel
Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, … M, Visel A , Woyke T, Kyrpides NC, Rubin EM (2014).  Stop codon reassignments in the wild.   Science 344:909-13 Nord …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the … of RiPPs, there’s no better place to start than with the publication that defined it . Oh, one more thing! In the …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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