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Natural Prodcast Episode 11: Marnix Medema
… we get to present our conversation with Marnix Medema , from Wageningen University in the Netherlands. Marnix is … and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … gene clusters. And I had heard the first rumors of people sequencing like these enormous numbers of genomes, like 20 …
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User Support
… that will be subject to the DOE JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials … specific milestones, either by automated emails or emails from your Project Manager. Your Project Manager will also … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Natural Prodcast Episode 5: Brad Moore
… the University of Hawaii and moved there in the early ’60s from Berkeley to work on this new budding field of marine … Bill Fenical. And we connected to JGI through the Community Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola . …
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CSP Functional Genomics
… form and are reviewed annually. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is … merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of the …
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Data Ecosystem
… A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. … ensure platforms are future-ready for advancements enabled by artificial intelligence and other tools. By bringing users together through our systems, we build …
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Genomic sequencing of single microbial cells from environmental samples
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Plant Microbial Interactions Group
… in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based … viruses can be found in a myriad of bacterial strains, whereby they can modulate host metabolism, gene expression and …
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Power in isolation: insights from single cells
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Natural Prodcast Episode 24: Jackie Winter and SMC
… organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … to grow. If you hear Nigel talk, he is very interested in sequencing a lot more natural product-heavy culture …
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Natural Prodcast Episode 1: The Primer, Part 1
… Laboratory. Being a User Facility means that scientists from all over the world bring us big problems related to … – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, … they figured out that they could culture the plant cells and produce enough that way in really large like 7500 …
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Natural Prodcast Episode 19: Bill Fenical
… real legends of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill … we want a chemist to study the ocean. And I didn’t find a single job advertisement. But one day, I decided to really … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for … a wide range of industrial applications. The team was led by researchers at two U.S. Department of Energy national … performing activities similar to the specialized animal cells or osteoblasts that make HAp. JGI researchers …
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