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Exploring the Diversity of the American Prairie’s Switchgrass
A tall native plant of the North American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to … you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … Biodiversity Groups, and it’s this great program funded by the National Institutes of Health and the National … you! We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in …
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Programs & Platform Leads
… the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon … JGI researchers drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, … Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data Science & Informatics. The …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … do some elicitation of production and did some meta-T [meta-transcriptomics] on that and identified just a small subset … elaborate chemicals with fantastical chemical structure and complexity. And obviously, all these reactions are catalyzed …
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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User Programs
… synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user … and metabolomics. Proposals may include synthetic biology, transcriptomics, DAP-seq, and metabolomics. Submission …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … home. Or actually not my room, it’s the room of my little baby daughter, who inherited this room from her sister. And it … types of data, including expression data, use of metatranscriptomics, where you measure gene expression levels of …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … synthesis, metabolomics and analysis will be performed by the JGI at no cost to the user. … All proposals first … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly
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User Support Analysis Group
… types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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CSP Large Scale Call
… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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