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… increasing our ability. And ultimately we went through a whole lot of different processes with plants and animals, … normal cells, particularly your hair cells, which are also rapidly growing, the cells in the mucosa lining of your … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …

… his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user … algorithm for RNA-Seq assembly. RNA-Seq is a technique for profiling the small fraction of a genome that contains … for building and maintaining cells through the use of deep-sequencing technologies. The internship program was born out …

… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, … ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ … solution for production of high-quality fungal reference genomes, this program is an important initiative that …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … and interesting biosynthetic pathway, and I’ll have to do a whole show on it one of these days. If you listen to the … The other way – the RiPP way, is to make a protein using the normal cellular way of making proteins, with a …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. A primary … or phenotype of interest, prior to and in conjunction with whole genome sequencing. …

… that will be subject to the DOE JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials … project at any time by logging on to the My Data Portal using your JGI login . After sequencing/metabolomics has … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …

… species.  The program supports the development of next-generation biofuels by studying perennial grasses and … also tackles challenges posed by environmental change, focusing on plant resilience — highlighting the vulnerabilities … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … identifying genes to that toxin, but it’s opened up this whole area of environmental health that we’re now working … you use that to do? Brad: Yeah, absolutely. You know, we’re using it as a way to be able to better predict when a toxic …

… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily … A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. …

… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … Coclet C, Camargo AP, Roux S. (2024) MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. …

… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … the minimum is 100 kb, and for metabolomics, at least 22 samples are required. If your proposed request falls … a core facility instead. Proposals may not exceed 10 Tbp sequencing, 500 kbp synthesis, and 200 polar/500 nonpolar …

… round; find out where our researchers will be presenting next. Go here to learn about upcoming user-focused webinars …