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Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach
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A simple, fast, and accurate method of phylogenomic inference
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate Research Experience (CURE) that consists of coordinated … techniques and data analyses compile original data for improving fungal genomic resources empower students …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean … and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into …
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JGI@25: From Life at the Extremes to Editing Genomes
Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … one in 2018 on the discovery of miniature CRISPR-associated proteins that can target single-stranded DNA. Such proteins … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could use to conduct a similar … diversity among inoviruses with more than 3,400 different proteins, many linked to key functions such as virion …
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Natural Prodcast Episode 6: Marc Chevrette
Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his … interesting place, in terms of secondary metabolism research, and I hope to be able to share a few more stories … to “Alice In Wonderland” where the Red Queen just runs faster and faster to stay in the same place. So this race, …
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Workforce Development & Education Outreach
The JGI aims to inspire more students to enter the STEM workforce by fostering an understanding of our role in advancing the energy and environmental genomics research frontier.  Learn more about the JGI's activities in … from high school to community college. … University of California, Merced … Alabama A&M University … CalTeach … Biotech …
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Intersubunit Coupling Enables Fast CO2‑Fixation by Reductive Carboxylases
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Accelerating Metagenomics Discoveries with Deep Learning
… participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … a branch of machine learning, data is passed through algorithms organized into multiple interconnected layers. … (JGI), presented on generating vector representations of proteins in order to conduct more efficient protein sequence …
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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