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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic … data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or …
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Partnerships: Myco-Ed
… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … metadata then goes into iNaturalist. Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members … through the links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page …
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JGI Portals
… expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … Download plant, algal, fungal and microbial genomes and metagenomes — …
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Natural Prodcast Episode 6: Marc Chevrette
… by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a … bit of background: Mark is a friend of mine from the company that we used to work at together called Warp Drive Bio, … As a host, and a little bit of my newer work is focused on plants, but in both cases, you know, these molecules are how …
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Good. How are you?  MARCY: Am fine. I live in a pandemic so I’m no different than anyone else.  DAN: Yeah. I … to do an independent study on ethnobotany of some of the plants that people were using for medicines in this very … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … Johns Hopkins. Brian went on to work at a groundbreaking company in the early 2000s called Ecopia, which was a very … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really …
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FICUS Overview
… Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at … through analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, microbial …
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Natural Prodcast Episode 9: Roger Linington
… his time between Bill Gerwick’s lab and doing research in Panama through support from the ICBG training program, which … good! I mean, I think that one of the many good things that comes out of those kinds of training experiences is the … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm plant host … by providing reference genomes of the key community participants and enabling future metagenomics studies.   … Programme: Deconstruction and Reconstruction of the Plant Microbiota (SPP DECRyPT 2125)’ and the Cluster of …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … the umbrella of our CSP: The Large Scale call is for expansive projects that leverage a range of JGI capabilities, … PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … local marine environment. I went out and picked up marine plants, I picked up animals. And I asked the simple … so we worked with the National Cancer Institute who had a panel of 60 different cancer cell lines. And we would send …
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