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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable … provides customized analysis, the JGI also participates in publication of results. … review by JGI staff as well as staff at the other participating facilities, who consider technical feasibility and …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of linking natural products to the evolutionary forces that drive them to appear. So based on that, is that we start … could be a reasonable number if you are talking about a plant and a microbe interacting very stably. So it makes … So we had a series of criteria to say this is a bunch of genetic material that exists in one copy, and it is …
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Exploring the Diversity of the American Prairie’s Switchgrass
… A tall native plant of the North American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry based metabolomics Below is a … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… bit more into fungi and learning the differences of all the genetic differences and then expanded on on that knowledge … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 4: Nancy Keller
… ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace … looking at that I’m a very visual person. So, when we make genetic mutants in a fungal isolate, I can see something … they deserve. They are so exciting. I get frustrated. Like microbiomes  – you know how that’s a big deal now. You go to …
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Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi
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Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)
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Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?
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metagRoot: a comprehensive database of protein families associated with plant root microbiomes
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … An assay used for profiling transcription factor binding sites across entire genomes. This technology has been …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … energy production and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can … Grant (P30CA046934). The work conducted by the National Microbiome Data Collaborative (https://ror.org/05cwx3318) is …
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