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Chapter Twelve Genomics for Key Players in the N Cycle From Guinea Pigs to the Next Frontier
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so heterotrophic bacteria. Now, we … at archive.jgi.doe.gov/user-programs . Thanks, and see you next time!  …
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, sample/capacity limits, … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New …
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … this identification, metabolomics enables functional genome annotation, improves understanding of the role small … Find more details on the instrumentation we use and our …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … mitochondrial genes as reliable markers for classifying species and studying diversity in complex biological … annotation due to features like self-splicing introns and multiple genetic codes. Adding to the challenge, …
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Natural Prodcast Episode 22: Alison Narayan
… stable? And those are important to us before we ask those next questions of will it work on many different substrates? … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … robot, which is essentially a little arm with a multi-channel pipette and you can write a program that tells …
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CSP Functional Genomics
… genomics research and to help them translate genomic information into biological function.  The emphasis is on projects … ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … the applicant.  Learn about the general review process or find details on the internal synthetic biology review process …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … updateable transcriptome resource spanning diverse plant species. It was developed to improve plant genome … time course data from two ecotypes of  Panicum hallii and multiple switchgrass ( Panicum virgatum ) experimental data. …
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Secondary Metabolites Program
… growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and communication. Studying … algae and plants. These compounds are key to organisms' interactions with their environments and with each other, …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and … the Department of Energy (DOE) has invested in training the next generation workforce through funding opportunities … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) … to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. …
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