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Natural Prodcast Episode 15: Katherine Duncan
… would be Katherine. Dan Udwary: Right. Kate Duncan: But most people that know me call me Kate. Dan Udwary: Great. So we’ve got Kate here today, and we wanted to talk to her about a whole list of things. So we … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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CSP Large Scale Call
All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data … by the due date printed below. Proposals will be invited from those applicants whose LOI is approved. The letter of … are approved will receive further instructions via email.   Human or animal disease-related work will NOT be considered …
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Natural Prodcast Episode 19: Bill Fenical
… real legends of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill … really excited today. We have, by far, I think, one of the most decorated and legendary natural products people– he’s … in the ocean. And that was the beginning of what I wanted to do with my career. In order to really make that …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist …
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Data Ecosystem
… to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and the development of new … to seamlessly access and analyze data on scales ranging from single genes and individual genomes to metagenomes to …
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Special Initiatives & Programs
… sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … with grants funded by DOE-BER requiring support from the JGI may  submit proposals here . Investigators … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy today to be handing over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue University. She’s in the Department of Chemistry … sizes. When we were starting off this project though, we wanted to be able to predict which one it was. And one of …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical … The ranked proposal list, along with a recommendation from management at JGI and the other participating …
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Sequencing Submission Requirements for DNA Synthesis
… please include the following items: … Sequence files for all constructs should be emailed to  Miranda … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop …
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Viral Genomics Group
… overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to … This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, nutrient cycling and … platform enables users to validate hypotheses generated from mining genomic data by designing and assembling …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our …
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