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… as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided for … percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …
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Environmental Genomics Group
… from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity of cell … including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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JGI Portals
… platforms are a key resource for the broader scientific community and require constant developments to meet the … demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) … species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. … topics.  Learn more in  Frontiers .   … Objective … What is MycoCosm? … Myco-Ed Partnerships … Are you or your …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
Webinar inviting researchers to submit white papers to the Community Science Program’s  Functional Genomics call for … the data had driven his lab’s focus on guide RNA library generation and development and its applications. “I moved to … Collaborations for User Science” (FICUS) initiative .  Q: What is the difference between “regular” proposal and a …
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Community Science Program
The Community Science Program (CSP) provides the scientific … the completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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You Can Move, But You Can’t Hide
… develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The Science … themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be … in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can …
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Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
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Project Management Office
This includes help with: preparing a Statement of Work, completing a formal User Agreement, and ultimately launching … FAQ in advance of contacting the PMO office.  … Before work can start on any approved proposal – including the … Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy Hammon Workflow Planning Manager …
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User Support
… to facilitate world-class science. DOE JGI Project Managers collaborate with users to develop project requirements, … Project design with Principal Investigator Providing a general orientation to JGI systems to Investigators … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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