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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE Metrics There …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … protection of certain types of data to support their use by those generating data. The JGI Data Policy … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … influencing the microbes there,” said Simon Roux , the Viral Genomics Group Lead at the JGI.  To understand the … light on another key aspect of viruses in the environment — their sheer genetic diversity. As pioneers of this field, …
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Frequently Asked Questions: Project Management
Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Uncultivated Viral Populations Dominate Estuarine Viromes on the Spatiotemporal Scale
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … you think it’ll take to get there? NADINE ZIEMERT: A lot of groups working together, having a lot of samples, sequencing …
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … environmental processes relevant to DOE, and advance their utility across the bioeconomy. The BER  major …
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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … regarding genome and metagenome sequencing projects, and their associated metadata, around the world. … The IMG/M … the largest publicly available collection of Uncultivated Viral Genomes, derived from genomes, metagenomes, and …
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Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … … We encourage submitters to contact the JGI to discuss their proposals prior to submission! Specific contact info …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … natural products field is based on, you know, in bacterial investigations. You’ve spent your whole career as far as I’m … bacteria, of course, are much smaller. But I think a lot of groups are sequencing fungi. Just going and sequencing them. …
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